Biol. Bull. Sign up for etocs!
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF) Free
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via ISI Web of Science (31)
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Halanych, K. M.
Right arrow Articles by Vrijenhoek, R. C.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Halanych, K. M.
Right arrow Articles by Vrijenhoek, R. C.
Related Collections
Right arrow Ecology
Right arrow Evolution
Right arrow Annelids
Right arrow Miscellaneous Invertebrates
Right arrow Systematics
Biol. Bull. 201: 65-75. (August 2001)
© 2001 Marine Biological Laboratory

Molecular Evidence that Sclerolinum brattstromi Is Closely Related to Vestimentiferans, not to Frenulate Pogonophorans (Siboglinidae, Annelida)

Kenneth M. Halanych1,*, Robert A. Feldman2 and Robert C. Vrijenhoek3

1 Biology Department MS 33, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543
2 Molecular Dynamics, Inc., part of Amersham Pharmacia Biotech, 928 East Arques Ave., Sunnyvale, California 94086-4250
3 Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, California 95039

* To whom correspondence should be addressed. E-mail: khalanych{at}whoi.edu


    Abstract
 TOP
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 Literature Cited
 
Siboglinids, previously referred to as pogonophorans, have typically been divided into two groups, frenulates and vestimentiferans. Adults of these marine protostome worms lack a functional gut and harbor endosymbiotic bacteria. Frenulates usually live in deep, sedimented reducing environments, and vestimentiferans inhabit hydrothermal vents and sulfide-rich hydrocarbon seeps. Taxonomic literature has often treated frenulates and vestimentiferans as sister taxa. Sclerolinum has traditionally been thought to be a basal siboglinid that was originally regarded as a frenulate and later as a third lineage of siboglinids, Monilifera. Evidence from the 18S nuclear rDNA gene and the 16S mitochondrial rDNA gene presented here shows that Sclerolinum is the sister clade to vestimentiferans although it lacks the characteristic morphology (i.e., a vestimentum). The rDNA data confirm the contention that Sclerolinum is different from frenulates, and further supports the idea that siboglinid evolution has been driven by a trend toward increased habitat specialization. The evidence now available indicates that vestimentiferans lack the molecular diversity expected of a group that has been argued to have Silurian or possibly Cambrian origins.


    Introduction
 TOP
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 Literature Cited
 
Siboglinids were formerly called pogonophorans and include two groups of marine protostomes, frenulates and vestimentiferans, that are commonly referred to as beardworms and tubeworms, respectively. Both groups lack a functional gut as adults and rely on endosymbiotic bacteria for nutrition. They have a closed circulatory system and possess a metamerized tail region called the opisthosoma. Vestimentiferans are distinguished from frenulates by the presence of a vestimentum, a winged region near the anterior of the organism. Both taxa occur in reducing environments and typically are found at depths below several hundred meters. Due to the limited availability of samples and the difficulty of retrieving live specimens, several aspects of their biology (e.g., reproduction, physiology) are still poorly understood. Vestimentiferans, in general, have been better studied than frenulates because they are keystone species in eastern Pacific hydrothermal vent habitats and in Pacific and Caribbean seeps.

The taxonomic literature concerning frenulate and vestimentiferan siboglinids has a colorful and confusing history. One taxonomic scheme recognizes frenulates (aka pogonophorans sensu stricto) and vestimentiferans as distinct phyla (Jones, 1985). Alternatively, vestimentiferans have also been recognized as a class within the phylum Pogonophora (Jones, 1981; Ivanov, 1994). Others place frenulates and vestimentiferans within the phylum Annelida (Land and Nørrevang, 1977; Kojima et al., 1993; Bartolomaeus, 1995; McHugh, 1997; Rouse and Fauchald, 1997; also see Southward, 1988). The latter hypothesis has been supported by recent morphological (Rouse and Fauchald, 1995, 1997), embryological (Young et al., 1996; Southward, 1999), and molecular analyses (Kojima et al., 1993; McHugh, 1997; Black et al., 1997; Kojima, 1998; Halanych et al., 1998). To further complicate matters, a ranked classification scheme has produced different names for the same clade of organisms. Vestimentiferans have been called Vestimentifera (Jones, 1981), Obturata (Jones, 1981; Southward, 1988; Southward and Galkin, 1997), and Afrenulata (Webb, 1969). Frenulates have been called Pogonophora (Jones, 1985), Frenulata (Webb, 1969), Perviata (Southward, 1988), and originally Siboglinidae (Caullery, 1914).

Hereafter we apply the following nomenclature: (1) Vestimentifera are equated with Obturata and Afrenulata; (2) Frenulata are equated with Perviata and Pogonophora (sensu Jones, 1985); (3) Monilifera is a third monogeneric clade that includes Sclerolinum; and (4) Siboglinidae refers to the clade that includes Vestimentifera, Frenulata, and Monilifera. We recognize that the term "Pogonophora" is more commonly used and that rules of priority for nomenclature do not apply to higher taxa. However, we have opted to use the term "Siboglinidae" throughout this manuscript to emphasize that this group of organisms represents derived annelids (McHugh, 1997; Rouse and Fauchald, 1997). We restrict the term "pogonophoran" to common usage.

Even among siboglinids, there has been one group, Sclerolinum, that has been particularly problematic in terms of phylogenetic position. Unlike most frenulates that live in the mud, Sclerolinum species can live on decaying organic material like wood or rope made from natural fibers (Webb, 1964a; Southward, 1972). This taxon was originally considered a member of the frenulate family Polybrachiidae (Southward, 1961), but Webb (1964b), mainly citing differences in the postannular region, argued that Sclerolinum could not be ascribed to either of the two orders (Thecanephria and Athecanephria) of siboglinids recognized at the time (vestimentiferans had not been discovered yet). He erected a new family, Sclerolinidae, that he states should "have order rank." Ivanov (1991) more formally recognized the unique nature of Sclerolinum, and in 1994 he proposed that Frenulata (= Perviata), Monilifera (= Sclerolinidae), and the Vestimentifera be regarded as three taxa with equal rank (i.e., classes within the phylum Pogonophora). Additionally, Ivanov (1994) further suggested that Monilifera are allied to the Vestimentifera on the basis of the common absence of several characters (e.g., spermatophores, telosomal diaphragm, metasoma preannular and postannular regions) relative to the Frenulata. Southward (1999) suggested that Monilifera might be similar to the ancestral siboglinid form, thus predicting that it should occupy a basal position in siboglinid phylogeny. Distinguishing between these hypotheses on the placement of Sclerolinum will allow us to test the notion of Black et al. (1997) that habitat preference or specificity may be an important factor in siboglinid evolution. If Black et al. are correct, Sclerolinum is expected to occupy a position between frenulates and vestimentiferans (which may be consistent with Ivanov’s ideas), and not a position basal to the frenulate-vestimentiferan clade.

To date, molecular studies that include siboglinids have either focused on vestimentiferans (Williams et al., 1993; Black et al., 1997; Kojima et al., 1997; Halanych et al., 1998) or have addressed siboglinid origins (Winnepenninckx et al., 1995a; Kojima et al., 1993; Kojima, 1998; McHugh, 1997). Most studies have included only one frenulate representative. Although Black et al. (1997) included two "frenulate" siboglinids, one of these, the Loihi worm, was undescribed. Additionally, several 18S sequences were reported in a symposium contribution (Halanych et al., 1998) for which page limitations did not permit detailed analyses or explanation. Herein we extend these previous analyses by increasing the sampling of frenulates, including Sclerolinum, and using novel 18S rDNA and 16S rDNA data. The present findings support the notion that habitat requirements have been important in siboglinid evolution. Additionally, frenulates are sister to a Sclerolinum-vestimentiferan clade, the latter of which showed limited diversity suggestive of a recent radiation within the clade.


    Materials and Methods
 TOP
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 Literature Cited
 
Taxa employed
Table 1 lists the species analyzed and GenBank accession numbers for the rDNA sequences used in this study. The frenulate and vestimentiferan operational taxonomic units (OTUs) included in this study represent all of the currently recognized genera available to the authors. The addition of closely related species within a genus would have increased OTUs without increasing the phylogenetic signal for the issues under examination and were therefore excluded. For example, there are no nucleotide differences observed in the 18S rDNA of Escarpia spicata (Guaymas Basin) and E. laminata (Florida Escarpment). Limiting the number of OTUs also reduced computation time, allowing for more thorough analyses. Unless otherwise noted, collection localities correspond to those given in Black et al. (1997). Siboglinum ekmani, S. fiordicum, and Sclerolinum brattstromi were collected near Bergen, Norway, and identified by Eve Southward, Marine Biological Association of the United Kingdom. Identification of the frenulates Spirobrachia and Polybrachia were made by Eve Southward on the basis of animal and tube morphology. Both specimens were collected by TVGrab from the Aleutian Trench (57°27.394'N, 148°00.013'W) at a depth of 4890 m on the German research vessel Sonne.


View this table:
[in this window]
[in a new window]
 
TABLE 1 Taxa used in rDNA analyses

 
The non-siboglinid annelid OTUs for the 18S data were chosen to represent a diversity of lineages for which sequences were available. The arthropod (Artemia) sequence was designated as the most distant outgroup for rooting purposes. Based on both morphology (e.g., Eernisse et al., 1992) and molecular studies (e.g., Halanych et al., 1995; Winnepenninckx et al., 1995a; Aguinaldo et al., 1997; Eernisse, 1997), arthropods are clearly outside of the protostome worm radiation. Because siboglinids are not closely related to molluscs and because of rate heterogeneity problems within the Mollusca, only a single representative (the aplacophoran Scutopus) was used. Due to alignment limitations, outgroups employed in the 16S analyses—a leech, an oligochaete, two polynoid polychaetes, and an echiurid—were more limited (see Table 1). Because different investigators collected the data at different times, there was not a 1:1 correspondence in OTUs between data sets. We felt it more important to present all the relevant data rather than trim taxa from the data sets. The aligned data sets are available at the journal’s Supplement’s page (http://www.mbl.edu/BiologicalBulletin/VIDEO/BB.video.html) and at TREEBASE (http://phylogeny.harvard.edu/treebase).

Data collection
Total genomic DNA was extracted using a modified hexadecyl-trimethyl-ammonium bromide (CTAB) protocol (Doyle and Dickson, 1987). The entire 18S nuclear rDNA gene was amplified via PCR (polymerase chain reaction), using the universal metazoan oligonucleotide primers 18e and 18P (Halanych et al., 1998). A region of the 16S mitochondrial rDNA was amplified using 16Sar-5' and 16Sbr-3' primers (Palumbi, 1996). Each 50 µl reaction consisted of about 50 ng of template DNA, 0.5 µM of each primer, 2.5 mM MgCl2, 200 µM dNTPs, 5 µl of manufacturer’s 10x reaction buffer, and 1.5 U Taq polymerase (Promega Inc., Wisconsin). Cycling profiles were as follows: 18S—initial denaturation at 95 °C for 3 min, 35 cycles of amplification (denaturation at 95 °C for 1 min, annealing at 50 °C for 2 min, extension at 72 °C for 2 min 30 s), and a final extension at 72 °C for 5 min; 16S—initial denaturation at 94 °C for 2 min, 40 cycles of amplification (denaturation at 94 °C for 30 s, annealing at 46 °C for 30 s, extension at 72 °C for 1 min), and a final extension at 72 °C for 7 min. PCR products were purified using the QIAEX II gel extraction kit (Qiagen Inc., California). Approximately 60 ng of purified PCR product was used in sequencing reactions according to the manufacturer’s instructions (FS Dye Termination Mix or Big Dye, Applied Biosystems Inc., California). The reaction profile was 25 repetitions of denaturation at 94 °C for 30 s, annealing at 50 °C for 15 s, and extension at 64 °C for 4 min. Dye-labeled fragments were separated by electrophoresis on a Perkin Elmer ABI 373A or 377 DNA sequencer. Both strands of the PCR product were sequenced. In addition to the PCR primers, the oligonucleotide primers used for sequencing are given in Halanych et al. (1998) or Hillis and Dixon (1991). The sequences were assembled and verified using the AutoAssembler and Sequence Navigator programs (Applied Biosystems Inc., California). The terminal primer regions were not included in the sequences submitted to GenBank or in the phylogenetic analyses.

Phylogenetic analyses
Sequence alignment was produced with a Clustal W program (Thompson et al., 1994) and subsequently corrected by hand using the protostome secondary structure models available through the Ribosomal Database project (http://rdp.cme.msu.edu/html/). Regions that could not be unambiguously aligned (e.g., divergent loop domains) were excluded from analyses. Tree reconstructions were implemented with the PAUP* 4.0b4b2 program (Swofford, 2000), and MacClade 3.06 (Maddison and Maddison, 1992) was used for character and tree analyses. Neighbor-joining (NJ), parsimony, and maximum likelihood (ML) analyses were performed and yielded similar results. In the interest of brevity, results and discussion will focus on ML analyses.

NJ trees were reconstructed under Jukes-Cantor, Kimura-2-parameter, Tamura-Nei, general-time-reversible, and log/det models. All except log/det were examined under equal rates of among-site rate variation using the empirically derived gamma shape parameter, {alpha}, of 0.3 (see Swofford et al., 1996, for summary of different assumptions used in these models). A Kishino-Hasegawa (1989) likelihood evaluation of the resulting topologies revealed no significant differences between models for either the 16S or the 18S data. Kishino-Hasegawa evaluations estimated a six-substitution-type rate matrix for which nucleotide base frequencies were set to empirical values and {alpha} was estimated. NJ bootstraps consisted of a log/det correction (model was arbitrarily chosen) with 1000 iterations. Parsimony analyses consisted of heuristic searches with 100 random sequence additions and tree-bisection-reconnection (TBR) branch swapping. Transitions (Ti) and transversions (Tv) were given equal weighting. ML evaluation of parsimony topologies was the same as for NJ topologies. One thousand iterations were used for parsimony bootstrap analyses. When using likelihood to search for the "best" tree (as opposed to evaluating given trees), computation time was limiting. Therefore, we used a nucleotide model with two substitution types where the Ti/Tv ratio was set to the value estimated for the best parsimony tree (empirical base frequencies were used). ML searches were heuristic with 10 random sequence-addition replicates. ML bootstraps employed the "Faststep" option with 100 iterations.


    Results
 TOP
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 Literature Cited
 
The 18S rDNA data set consisted of 26 OTUs and 1935 nucleotide positions. Of the 1614 nucleotide positions that could be unambiguously aligned, 34.6% (559 positions) were variable and 18.7% (303 positions) were parsimony informative. Figure 1 shows the single best likelihood tree (Ln likelihood = -8260.55148) recovered. All search methods in all analyses found a monophyletic siboglinid clade (bootstrap support was >=98% for all methods). Resolution within the vestimentiferan clade, as well as between annelid groups, was poor, however. The moniliferan Sclerolinum brattstromi falls out with the vestimentiferan taxa in all analyses (bootstrap >= 98%). The remaining frenulates form a distinct sister-clade to the Sclerolinum-vestimentiferan clade with >=99% bootstrap support.



View larger version (25K):
[in this window]
[in a new window]
 
Figure 1. Results of 18S rDNA phylogenetic analyses. The single best likelihood tree (Ln likelihood = -8260.55148) found. Analysis details are given in the text. Maximum likelihood bootstrap values of >=50% are given in bold. Parsimony (italic) and neighbor joining (underlined) values are also given for the major nodes of interest (values for other nodes were omitted in the interest of space). Branch lengths are drawn proportional to the inferred amount of change along the branch (scale shown).

 
Resolution among annelid taxa and within the vestimentiferans was poor due to the lack of phylogenetic signal. Because this paper does not focus on the annelid radiation, we did not try to enhance resolution among all annelid taxa. However, we did attempt to boost the signal within the vestimentiferan clade by employing a less inclusive taxonomic alignment. For metazoan 18S sequences, inclusion of broader taxonomic diversity can often create larger regions of ambiguous alignment that should not be included in analyses, due to poor assumptions about positional homology. Thus by reducing the taxonomic breadth examined, the phylogenetic signal can potentially be increased by a "better" alignment (Halanych, 1998). Unfortunately, even when just the siboglinids were aligned, little genetic diversity was observed, and the vestimentiferan taxa were still poorly resolved (not shown). The exception was Lamellibrachia barhami, which was consistently placed as the most basal vestimentiferan. Table 2 shows the logdet/paralinear distances (below diagonal) and absolute distances (above diagonal) for this less-inclusive, siboglinid-only alignment (in which most divergent domains could be unambiguously aligned). Even though the distance values for the siboglinid-only alignment are only slightly greater than the full alignment values, the greatest distance within vestimentiferans was only 0.02 (with a maximum of 25 nucleotide differences), revealing that there was very little 18S genetic diversity within this group.


View this table:
[in this window]
[in a new window]
 
TABLE 2 Pairwise distances for the siboglinid-only 18S rDNA data set; absolute distances above diagonal and log/det distances below diagonal

 
The 16S rDNA data set consisted of 24 OTUs, each with 497 nucleotide positions. Of the 465 nucleotide positions that could be unambiguously aligned, 60.4% (281 positions) were variable and 47.7% (222 positions) were parsimony informative. The reconstructed topology (Ln likelihood = -3967.21062), Figure 2, was qualitatively similar to the 18S topology. Siboglinids are divided into two major lineages: vestimentiferans plus the moniliferan Sclerolinum brattstromi (bootstrap support 83% for ML and 100% for NJ and parsimony) and a frenulate sister-clade (bootstrap support >=94% in all analyses). Again, S. brattstromi was basal to the vestimentiferans. In a departure from the 18S analyses, Riftia pachyptila, not Lamellibrachia barhami, often fell out as the most basal vestimentiferan. However, this was never supported by >54% bootstrap support; ML analyses that excluded the non-siboglinid outgroups revealed that the base of the Vestimentifera was poorly resolved with 16S data. A comparison of genetic divergence values (Table 3) indicates that there was limited genetic variation within vestimentiferans (<=0.11 log/det distance; a maximum of 47 nucleotide differences).



View larger version (24K):
[in this window]
[in a new window]
 
Figure 2. Results of 16S rDNA phylogenetic analyses. The best likelihood tree (Ln likelihood = -3967.21062) found. Another tree with a Ln likelihood score of -3967.25739 was found in the same search. The trees differed in relationships within the Ridgeia clade. Analysis details are given in the text. Maximum likelihood (ML) bootstrap values of >=50% are given in bold. Parsimony (italic) and neighbor joining (underlines) values are also given for the major nodes of interest (values for other nodes were omitted in the interest of space). In the ML bootstrap analysis, Lamellibrachia and Sclerolinum formed a clade in 55% of the iterations. That is not shown above because it is incompatible with the "best" ML tree. Branch lengths are drawn proportional to the inferred amount of change along the branch (scale shown).

 

View this table:
[in this window]
[in a new window]
 
TABLE 3 Pairwise distances for 16S rDNA data set; absolute distances above diagonal and log/det distances below diagonal

 
As for the frenulate clade, neither 18S or 16S supported a monophyletic Siboglinum; but because only two Siboglinum species were examined, additional taxa are needed to verify the status of this frenulate taxon. Additionally, we performed Kishino-Hasegawa (1989) likelihood evaluation for both genes to test the monophyly of the frenulate and vestimentiferan-Sclerolinum clades. To this end, we used the constraints option in PAUP* 4.0b4b2 to conduct parsimony heuristic searches (specifics same as above) to find the best trees that were consistent and inconsistent with the monophyly of these clades. Both the 16S and the 18S data significantly support the monophyly of both groups (18S frenulates—average ML score supporting monophyly = -8244.69, non-monophyly score = -8278.135, P value < 0.01; 16S frenulates—monophyly = -3894.889, non-monophyly = -3927.49, P value < 0.005; 18S vestimentiferan-Sclerolinum—monophyly = -8244.69, non-monophyly = -8271.922, P value < 0.05; 16S vestimentiferan-Sclerolinum—monophyly = -3894.889, non-monophyly = -3911.802, P value < 0.05).


    Discussion
 TOP
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 Literature Cited
 
The monophyly of siboglinids (aka, Pogonophora sensu latu) is supported by morphological (Southward, 1988, 1993; Rouse and Fauchald, 1995; Rouse, 2001), embryological (Southward, 1999), and molecular (Winnepenninckx et al., 1995a; Black et al., 1997; McHugh, 1997; Halanych et al., 1998, this study) evidence. Thus, in agreement with others (Southward, 1988, 1999; Ivanov, 1994; McHugh, 1997), we see no support for the recognition of vestimentiferans and frenulates as having fundamentally different body plans (i.e., "phyla" sensu Jones, 1985). The assertion made by Webb (1964b) and later by Ivanov (1991, 1994) that Sclerolinum was notably different from frenulates is validated by the present data. Moreover, we found that Sclerolinum brattstromi is closely allied to the vestimentiferans, and does not occupy a position basal to a frenulate-vestimentiferan clade, confirming Ivanov’s (1991; 1994; Ivanov and Selivanova, 1992) ideas that moniliferans occupy a position intermediate between vestimentiferans and frenulates.

Southward (1993) also suggested a possible evolutionary link between Sclerolinum and vestimentiferans. This contention is confirmed by the present analysis, as well as a recent morphological cladistic analysis (Rouse, 2001). Using 44 morphological characters coded for all recognized siboglinid genera, Rouse found support for the monophyly of Frenulata, Vestimentifera, and the Sclerolinum-vestimentiferan clade. However, our use of nomenclature differs from Rouse with regard to the term Monilifera, which he applies to the Sclerolinum-vestimentiferan clade. Because this term was originally (Ivanov and Selivanova, 1992) applied to only Sclerolinum, and because of the morphological differences from vestimentiferans, Rouse’s use of the term will inject confusion into the literature. Although we acknowledge that Monilifera, as defined here, is redundant with the generic name Sclerolinum, several aspects of siboglinid evolution and taxonomy are in need of additional study. Thus, we have chosen not to name this clade until more is understood about siboglinid evolution.

The placement of Sclerolinum was especially interesting in the context of the evolution of habitat preference. Previous studies of vestimentiferans (Black et al., 1997), clams (Peek et al., 1997), mussels (Craddock et al., 1995), and shrimp (Shank et al., 1999) reveal that vent-endemic organisms are related to, and possibly derived from, species associated with hydrocarbon seeps that occur near subduction zones and continental margins. Furthermore, recent observations (Feldman et al., 1998; Baco et al., 1999; Distel et al., 2000) reveal that several symbiont-bearing clams, vestimentiferan tubeworms, and mussels can survive on rotting organic material, such as wood or a whale carcass. The moniliferan S. brattstromi and related species (e.g., S. javanicum, S. minor, and S. major) are typically found growing on decaying organic material such as wood or rope (Webb, 1964a, b; Southward, 1972; Ivanov and Selivanova, 1992). Other members of the genus, (e.g., S. sibogae and S. magdalenae) lived buried in mud (Southward, 1972). These habitat preferences suggest that affinity for a mud or silt habitat was ancestral in siboglinids, allowing us to speculate that a pattern of evolution from low-oxygen, sedimented habitats to decaying organic material to hydrocarbon seeps to hydrothermal vents has occurred within the Sclerolinum-vestimentiferan clade.

Although neither the 18S nor the 16S data clearly resolve relationships within the Vestimentifera, the cytochrome c oxidase subunit I (COI) data of Black et al. (1997) show seep tubeworms to be basal to vent tubeworms (but see Williams et al., 1993). This pattern in the evolution of habitat preference roughly proceeds from less reducing to more reducing (greater sulfide and methane availability) environments. A similar evolutionary trend was observed in bathymodiolid mussels (Craddock et al., 1995; Distel et al., 2000). Examination of additional taxa is needed to verify whether this is a general trend in the evolution of vent and seep taxa.

All molecular studies to date (Williams et al., 1993; Black et al., 1997; and Tables 2 and 3) reveal that vestimentiferans exhibit very limited molecular diversity for a group suggested to be several hundred million years old. This lack of diversity may be due to a slowdown in the rate of molecular change (i.e., nucleotide substitution) in vestimentiferans, a recent common origin for extant vestimentiferans, or possibly both. For the present 18S rDNA sequences, vestimentiferans appear to have experienced a significant molecular slowdown relative to the frenulates or other protostome taxa (Table 4; as judged using an HKY plus gamma correction model in the HyPhy software package distributed by S. Muse, Department of Statistics, North Carolina State University). With 16S data, only 13.4% of tests between frenulates and members of the vestimentiferan-Sclerolinum clade were significant. Although this value is not statistically significant, it is a greater percentage than is found within either group (~3%), suggesting that a limited rate discrepancy may exist. Similar rate disparities were not observed for COI data (Black et al., 1997), but only one frenulate was used in the comparison. Nonetheless, we concluded that present-day vestimentiferans constitute a young evolutionary group.


View this table:
[in this window]
[in a new window]
 
TABLE 4 Percent of significant tests when comparing relative substitution rates between the two major siboglinid clades

 
In contrast, previous interpretation of Silurian tubeworm fossils (Little et al., 1997) as vestimentiferans suggested that these worms constitute an ancient animal lineage. It is possible that the Silurian tubeworm fossils represent an earlier offshoot from an ancient siboglinid lineage, but this will be impossible to test as the fossils lack the necessary soft-tissue preservation. Additionally, we note that many wormlike invertebrates make tubes. For example, some alvinellid polychaetes observed during our recent expedition to vents along the Southern Eastern Pacific Rise (32°S, 100°W) occupied tubes with diameters comparable to the tubes of mature Riftia pachyptila. Many of the alvinellid tubes were partially overgrown by sulfide chimneys, and thus were effectively "fossilized." Although we are not convinced of the interpretation of Silurian fossils as representative of an extant lineage of vestimentiferans, we should point out that specimens from the Cretaceous are convincing (Little et al., 1999). In contrast, all the hydrothermal vent-endemic taxa that have been examined with appropriate molecular tools appear to be from relatively recent radiations (i.e., <100 MY; Black et al., 1997; Peek et al., 1997; Shank et al., 1999; McArthur and Koop, 1999; but see McArthur and Tunnicliffe, 1998, for possible exceptions).


    Acknowledgments
 
We appreciate thoughtful interactions and support of our colleagues at Rutgers University. We wish to thank the crews and staff of the R/V Altantis/Alvin, the German research vessel Sonne, and the Bergen Marine Station in Espegrend for their help in obtaining organisms. Samples of the Spirobrachia and Polybrachia were provided by R. Lutz (with help from Gyöngyvér Lévai) and identified by Eve Southward, who has been especially generous with information and guidance. The Escarpiid n. sp. was kindly made available by Verena Tunnicliffe and Eve Southward. Material from Norway was collected with aid from the Training and Mobility of Researchers Programme of the European Union, through Contract NO. ERBFMGECT950013 to Eve Southward. Research was supported by an NSF grant, OCE96-33131 to RCV and R. Lutz. The Richard B. Sellars Endowed Research Fund and The Andrew W. Mellon Foundation Endowed Fund for Innovative Research provided partial support to KMH. This is WHOI contribution number 10443.


    Footnotes
 
Received 22 November 2000; accepted 11 April 2001.


    Literature Cited
 TOP
 Abstract
 Introduction
 Materials and Methods
 Results
 Discussion
 Literature Cited
 

    Aguinaldo, A. M. A., J. M. Turbeville, L. S. Linford, M. C. Rivera, J. R. Garey, R. A. Raff, and J. A. Lake. 1997. Evidence for a clade of nematodes, arthropods and other moulting animals. Nature387:489–493.[Medline]
    Baco, A. R., C. R. Smith, G. K. Roderick, A. S. Peek, and R. C. Vrijenhoek. 1999. Molecular identification of vesicomyid clams associated with whale-falls on the California Slope. Mar. Ecol. Prog. Ser.182:137–147.
    Bartolomaeus, T. 1995. Structure and formation of the uncini in Pectinaria koreni, Pectinaria auricoma (Terebellida) and Spirorbis spirorbis (Sabellida): implications for annelid phylogeny and the position of the Pogonophora. Zoomorphology115:161–177.[Web of Science]
    Black, M. B., K. M. Halanych, P. A. Y. Maas, W. R. Hoeh, J. Hashimoto, D. Desbruyeres, R. A. Lutz, and R. C. Vrijenhoek. 1997. Molecular systematics of vestimentiferan tubeworms from hydrothermal vents and cold-water seeps. Mar. Biol.130:141–149.
    Caullery, M. 1914. Sur les Siboglinidae, type nouveau d’invertébrés recueilli par l’expédition du Siboga. C. R. Acad. Sci.158:2014–2017.
    Craddock, C., W. R. Hoeh, R. G. Gustafson, R. A. Lutz, J. Hashimoto, and R. C. Vrijenhoek. 1995. Evolutionary relationships among deep-sea mytilids (Bivalvia: Mytilidae) from hydrothermal vents and cold-water methane/sulfide seeps. Mar. Biol.121:477–485.
    Distel, D. L., A. R. Baco, E. Chuang, W. Morrill, C. Cavanaugh, and C. R. Smith. 2000. Marine ecology: Do mussels take wooden steps to deep-sea vents? Nature403:725.[Medline]
    Doyle, J. J., and E. Dickson. 1987. Preservation of plant samples for DNA restriction endonuclease analysis. Taxon36:715–722.[Web of Science]
    Eernisse, D. J. 1997. Arthropod and annelid relationships re-examined. Pp. 43–56 in Arthropod Relationships, R. A. Fortey and R. H. Thomas, eds. Chapman and Hall, London.
    Eernisse, D. J., J. S. Albert, and F. E. Anderson. 1992. Annelida and Arthropoda are not sister taxa: a phylogenetic analysis of spiralian metazoan phylogeny. Syst. Biol.41:305–330.
    Feldman, R. A., T. M. Shank, M. B. Black, A. R. Baco, C. R. Smith, and R. C. Vrijenhoek. 1998. Vestimentiferan on a whale fall. Biol. Bull.194:116–119.[Abstract]
    Halanych, K. 1998. Considerations for reconstructing metazoan history: signal, resolution and hypothesis testing. Am. Zool.38:929–941.
    Halanych, K. M., J. D. Bacheller, A. M. A. Aguinaldo, S. M. Liva, D. M. Hillis, and J. A. Lake. 1995. Evidence from 18S ribosomal DNA that the lophophorates are protostome animals. Science267:1641–1643.[Abstract/Free Full Text]
    Halanych, K. M., R. A. Lutz, and R. C. Vrijenhoek. 1998. Evolutionary origins and age of vestimentiferan tube-worms. Cah. Biol. Mar.39:355–358.
    Hillis, D. M., and M. T. Dixon. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol.66:411–453.[Medline]
    Ivanov, A. V. 1991. Monilifera—a new subclass of Pogonophora. Dokl. Akad. Nauk. S.S.S.R.319:505–507.
    Ivanov, A. V. 1994. On the systematic position of Vestimentifera. Zool. Jahrb. Abt. Syst. Ökol. Geogr. Tiere121:409–456.
    Ivanov, A. V., and R. V. Selivanova. 1992. Sclerolinum javanicum, sp. n., a new pogonophoran living on rotten wood. A contribution to the classification of Pogonophora. Biol. Morya (Vladivost.) 1–2:27–33.
    Jones, M. L. 1981. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos rift geothermal vents (Pogonophora). Proc. Biol. Soc. Wash.93:1295–1313.
    Jones, M. L. 1985. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere. Bull. Biol. Soc. Wash.6:117–158.
    Kim, C. B., S. Y. Moon, S. R. Gelder, and W. Kim. 1996. Phylogenetic relationships of annelids, molluscs, and arthropods evidenced from molecules and morphology. J. Mol. Evol.43:207–215.[Web of Science][Medline]
    Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol.29:170–179.[Web of Science][Medline]
    Kojima, S. 1998. Paraphyletic status of Polychaeta suggested by phylogenetic analysis based on the amino acid sequences of elongation factor-1-alpha. Mol. Phylogenet. Evol.9:255–261.[Web of Science][Medline]
    Kojima, S., T. Hashimoto, M. Hasegawa, S. Murata, S. Ohta, H. Seki, and N. Okada. 1993. Close phylogenetic relationship between Vestimentifera (tube worms) and Annelida revealed by amino acid sequence of elongation factor-1a. J. Mol. Evol.37:66–70.[Web of Science][Medline]
    Kojima, S., R. Segawa, J. Hashimoto, and S. Ohta. 1997. Molecular phylogeny of vestimentiferans collected around Japan, revealed by the nucleotide sequences of mitochondrial DNA. Mar. Biol.127:507–513.
    Land, J. v. d., and A. Nørrevang. 1977. The systematic position of Lamellibrachia (Annelida, Vestimentifera). Z. Zool. Syst. Evolutionsforsch.1975:85–101.
    Little, C. T. S., R. J. Herrington, V. V. Maslennikov, N. J. Morris, and V. V. Zaykov. 1997. Silurian hydrothermal-vent community from the southern Urals, Russia. Nature385:146–148.
    Little, C., J. Cann, R. Herrington, and M. Morrisseau. 1999. Late Cretaceous hydrothermal vent communities form the Troodos ophiolite, Cyprus. Geology27:1027–1030.[Abstract/Free Full Text]
    Maddison, W. P., and D. R. Maddison. 1992. MacClade: Analysis of Phylogeny and Character Evolution., Sinauer Associates, Sunderland, MA.
    McArthur, A. G., and B. F. Koop. 1999. Partial 28S rDNA sequences and the antiquity of hydrothermal vent endemic gastropods. Mol. Phylogenet. Evol.13:255–274.[Web of Science][Medline]
    McArthur, A. G., and V. Tunnicliffe. 1998. Relics and antiquity revisited in modern vent fauna. Pp. 271–291 in Modern Ocean Floor Processes and the Geological Record, R. A. Mills and K. Harrison, eds. Geological Society, London.
    McHugh, D. 1997. Molecular evidence that echiurans and pogonophorans are derived annelids. Proc. Natl. Acad. Sci. USA94:8006–8009.[Abstract/Free Full Text]
    Nelles, L., B. L. Fang, G. Volckaert, A. Vandenberghe,R. De Wachter. 1984. Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs. Nucleic Acids Res.12:8749–8768.[Abstract/Free Full Text]
    Palumbi, S. R. 1996. Nucleic acids II: the polymerase chain reaction. Pp. 205–248 in Molecular Systematics, D. M. Hillis, C. Mortiz, and B. K. Mable, eds. Sinauer Associates, Sunderland, MA.
    Peek, A. S., R. G. Gustafson, R. A. Lutz, and R. C. Vrijenhoek. 1997. Evolutionary relationships of deep-sea hydrothermal vent and cold-water seep clams (Bivalvia: Vesicomyidae): results from mitochondrial cytochrome oxidase subunit I. Mar. Biol.130:151–161.[Web of Science]
    Rouse, G. 2001. A cladistic analysis of Siboglinidae Caullery, 1914 (Polychaeta, Annelida): formerly the phyla Pogonophora and Vestimentifera. Zool. J. Linn. Soc.132:55–80.
    Rouse, G. W., and K. Fauchald. 1995. The articulation of annelids. Zool. Scr.24:269–301.
    Rouse, G. W., and K. Fauchald. 1997. Cladistics and polychaetes. Zool. Scr.26:139–204.
    Shank, T. M., M. B. Black, K. M. Halanych, R. A. Lutz, and R. C. Vrijenhoek. 1999. Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): evidence from mitochondrial cytochrome oxidase subunit I. Mol. Phylogenet. Evol.13:244–254.[Web of Science][Medline]
    Southward, E. C. 1961. Siboga-Expeditie Pogonophora., Siboga-Expeditie series, vol. 25. E. J. Brill, Leiden.
    Southward, E. C. 1972. On some Pogonophora from the Caribbean and the Gulf of Mexico. Bull. Mar. Sci.22:739–776.
    Southward, E. C. 1988. Development of the gut and segmentation of newly settled stages of Ridgeia (Vestimentifera): implications for relationship between Vestimentifera and Pogonophora. J. Mar. Biol. Assoc. UK68:465–487.
    Southward, E. C. 1993. Pogonophora. Pp. 327–369 in Microscopic Anatomy of Invertebrates. Wiley-Liss, New York.
    Southward, E. C. 1999. Development of Perviata and Vestimentifera (Pogonophora). Hydrobiologia402:185–202.[Web of Science]
    Southward, E. C., and S. V. Galkin. 1997. A new vestimentiferan (Pogonophora: Obturata) from hydrothermal vent fields in the Manus Back-Arc Basin (Bismarck Sea, Papua New Guinea, southwest Pacific Ocean). J. Nat. Hist.31:43–55.
    Swofford, D. L. 2000. PAUP* 4.0 (Phylogenetic Analysis Using Parsimony)., Sinauer Associates, Sunderland, MA.
    Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. Pp. 407–514 in Molecular Systematics, D. M. Hillis, C. Mortiz, and B. K. Mable, eds. Sinauer Associates, Sunderland, MA.
    Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res.22:4673–4680.[Abstract/Free Full Text]
    Webb, M. 1964a. A new bitentaculate pogonophoran from Hardangerfjorden, Norway. Sarsia15:49–55.
    Webb, M. 1964b. Additional notes on Sclerolinum brattstromi (Pogonophora) and the establishment of a new family, Sclerolinidae. Sarsia16:47–58.
    Webb, M. 1969. Lamellibrachia barhami, gen. nov. sp. nov. (Pogonophora), from the northeast Pacific. Bull. Mar. Sci.19:18–47.
    Williams, N. A., D. R. Dixon, E. C. Southward, and P. W. H. Holland. 1993. Molecular evolution and diversification of the vestimentiferan tube worms. J. Mar. Biol. Assoc. U.K.73:437–452.
    Winnepenninckx, B., T. Backeljau,R. De Wachter. 1995a. Phylogeny of protostome worms derived from 18S rRNA sequences. Mol. Biol. Evol.12:641–649.[Abstract]
    Winnepenninckx, B., T. Backeljau, L. Y. Mackey, J. M. Brooks, R. De Wachter, S. Kumar, and J. R. Garey. 1995b. 18S rRNA data indicate that Aschelminthes are polyphyletic in origin and consist of at least three distinct clades. Mol. Biol. Evol.12:1132–1137.[Abstract]
    Winnepenninckx, B., T. Backeljau,R. De Wachter. 1996. Investigation of molluscan phylogeny on the basis of 18S rRNA sequences. Mol. Biol. Evol.13:1306–1317.[Abstract]
    Young, C. M., E. Vázquez, A. Metaxas, and P. A. Tyler. 1996. Embryology of vestimentiferan tube worms from deep-sea methane/sulphide seeps. Nature381:514–516.



This article has been cited by other articles:


Home page
Biol. Bull.Home page
D. J. Thornhill, A. A. Wiley, A. L. Campbell, F. F. Bartol, A. Teske, and K. M. Halanych
Endosymbionts of Siboglinum fiordicum and the Phylogeny of Bacterial Endosymbionts in Siboglinidae (Annelida)
Biol. Bull., April 1, 2008; 214(2): 135 - 144.
[Abstract] [Full Text] [PDF]


Home page
Integr. Comp. Biol.Home page
K. M. Halanych and A. M. Janosik
A review of molecular markers used for Annelid phylogenetics
Integr. Comp. Biol., August 1, 2006; 46(4): 533 - 543.
[Abstract] [Full Text] [PDF]


Home page
Integr. Comp. Biol.Home page
G. Purschke and M. C. M. Muller
Evolution of body wall musculature
Integr. Comp. Biol., August 1, 2006; 46(4): 497 - 507.
[Abstract] [Full Text] [PDF]


Home page
Proc R Soc BHome page
A. G Glover, B. Kallstrom, C. R Smith, and T. G Dahlgren
World-wide whale worms? A new species of Osedax from the shallow north Atlantic
Proc R Soc B, December 22, 2005; 272(1581): 2587 - 2592.
[Abstract] [Full Text] [PDF]


Home page
Biol. Bull.Home page
R. Marotta, G. Melone, M. Bright, and M. Ferraguti
Spermatozoa and Sperm Aggregates in the Vestimentiferan Lamellibrachia luymesi Compared With Those of Riftia pachyptila (Polychaeta: Siboglinidae: Vestimentifera)
Biol. Bull., December 1, 2005; 209(3): 215 - 226.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
R. M. Jennings and K. M. Halanych
Mitochondrial Genomes of Clymenella torquata (Maldanidae) and Riftia pachyptila (Siboglinidae): Evidence for Conserved Gene Order in Annelida
Mol. Biol. Evol., February 1, 2005; 22(2): 210 - 222.
[Abstract] [Full Text] [PDF]


Home page
ScienceHome page
G. W. Rouse, S. K. Goffredi, and R. C. Vrijenhoek
Osedax: Bone-Eating Marine Worms with Dwarf Males
Science, July 30, 2004; 305(5684): 668 - 671.
[Abstract] [Full Text] [PDF]


Home page
Integr. Comp. Biol.Home page
K. M. Halanych, T. G. Dahlgren, and D. McHugh
Unsegmented Annelids? Possible Origins of Four Lophotrochozoan Worm Taxa
Integr. Comp. Biol., July 1, 2002; 42(3): 678 - 684.
[Abstract] [Full Text] [PDF]


This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF) Free
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via ISI Web of Science (31)
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Halanych, K. M.
Right arrow Articles by Vrijenhoek, R. C.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Halanych, K. M.
Right arrow Articles by Vrijenhoek, R. C.
Related Collections
Right arrow Ecology
Right arrow Evolution
Right arrow Annelids
Right arrow Miscellaneous Invertebrates
Right arrow Systematics


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS